ftp://ftp.ncbi.nih.gov/pub/HomoloGene/current/
####
homologene_group_id | tax_id | geneid | symbol | protein_gi | protein_accession
---------------------+--------+---------+-----------------+------------+-------------------
3 | 9606 | 34 | ACADM | 187960098 | NP_001120800.1
3 | 9598 | 469356 | ACADM | 114557331 | XP_524741.2
3 | 9615 | 490207 | ACADM | 73960161 | XP_547328.2
3 | 9913 | 505968 | ACADM | 115497690 | NP_001068703.1
3 | 10090 | 11364 | Acadm | 6680618 | NP_031408.1
3 | 10116 | 24158 | Acadm | 8392833 | NP_058682.1
3 | 7955 | 406283 | acadm | 47085823 | NP_998254.1
3 | 7227 | 38864 | CG12262 | 24660351 | NP_648149.1
3 | 7165 | 1276346 | AgaP_AGAP005662 | 58387602 | XP_315683.2
3 | 6239 | 181757 | acdh-10 | 17569725 | NP_510788.1
(
##
##
#!/bin/sh
wget ftp://ftp.ncbi.nih.gov/pub/HomoloGene/current/homologene.data;
< homologene.data psql -c "
drop table if exists my_homologene_data;
create table my_homologene_data (
homologene_group_id integer ,
tax_id integer ,
geneid integer ,
symbol text ,
protein_gi integer ,
protein_accession text
);
copy my_homologene_data from stdin csv delimiter E'\t';
";
echo "select count(*) from my_homologene_data" | psql;
##
##
select * from my_homologene_data where homologene_group_id = 31015
##
##
http://www.ncbi.nlm.nih.gov/homologene/?term=31015