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Re: Reading in Qual File Using Bio::SeqIO

by biohisham (Priest)
on Jul 01, 2010 at 22:13 UTC ( #847642=note: print w/ replies, xml ) Need Help??

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  1. or download this
    use strict;
    use warnings;
    
  2. or download this
    use strict;
    use warnings;
    ...
            }
    use Data::Dumper;
    print Dumper(\%qual_hash);
    
  3. or download this
    use strict;
    use warnings;
    ...
    use Bio::SeqIO;
    my $file = "Qual.txt";
    my $qual_obj = Bio::SeqIO->new(-file =>"<$file",-format=>'qual',);
    
  4. or download this
    #THIS DOESN'T READ THE FILE RIGHT..
    
    ...
    
    use Data::Dumper;
    print Dumper(\%seq_hash);
    
  5. or download this

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