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Re^3: Bioinformatics: Slow Parsing of a Fasta File

by BrowserUk (Patriarch)
on Mar 23, 2011 at 06:21 UTC ( [id://894943]=note: print w/replies, xml ) Need Help??

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  1. or download this
    #! perl -slw
    use strict;
    ...
    acgcgccctacactctggcatgggggaacccggccccgcagagggccctgga
    CTCTGACATTGGAGGACTCCTCGGCTACGTCCTGGACTCCTGCACAAGAG
    
  2. or download this
    C:\test>fasta
    {
    ...
      "uc002yje.2 > chr21:13974492-13975432" => "cccctgccccaccgcaccctggatt
    +actgcacgccaagaccctcacctgaacgcgccctacactctggcatgggggaaaaaacccggccccgca
    +gagccctggaCTCTGACATTGGAGGACTCCTCGGCTACGTCCTGGACTCCTGCACAAGAG",
      "uc002yje.3 > chr21:13975431-13976330" => "cccctgccccaccgcaccctggatt
    +actgcacgccaagaccctcacctgaacgcgccctacactctggcatgggggaacccggccccgcagagg
    +gccctggaCTCTGACATTGGAGGACTCCTCGGCTACGTCCTGGACTCCTGCACAAGAG",
    }
    

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