Please put your data inside <code> ... </code> tags. Otherwise we cannot see where the lines start and end.
Update: I see that each block in both files have a 6_Fast_HLR_activations_(CP) item. How to deal with that? Take the average within each file? Compare it on a block by block basis (but then you get 3 output lines, one for each block)? Take the smallest from one file and the largest from the other file? Or something else entirely?
A program should be light and agile, its subroutines connected like a string of pearls. The spirit and intent of the program should be retained throughout. There should be neither too little or too much, neither needless loops nor useless variables, neither lack of structure nor overwhelming rigidity." - The Tao of Programming, 4.1 - Geoffrey James