I used UNIX to join 2 files based on the first column, but now i want to use it on windows, so UNIX won't work anymore.
I wrote a script to do it in Perl, but this takes for ever. I read something about hashes and that it should be faster this way. Could somebody help me with this?
The two files have a different nr of columns and rows and when column 1 is equal the two files should be merged. The files are tab separated.
What I did in Unix was just sort the files and join.
My code in Perl looks like this:
my $file1 = $ARGV[0];
my $file2 = $ARGV[1];
open(first_file,'<', $file1) or die $!;
my @FILE1 = <first_file>;
close(first_file);
open(sec_file,'<', $file2) or die $!;
my @FILE2 = <sec_file>;
close(sec_file);
@RESULTS;
for my $line(@FILE1){
my($ID, @values) = split("\t", $line);
for my $sec_line(@FILE2){
my($ID2, @values2) = split("\t", $sec_line);
if($ID eq $ID2){
push (@RESULTS, "$ID @values @values2");
}
}
}
open(RESULTS,'>','results.txt') or die $!;
foreach(@results){
print RESULTS "$_\n";
}
close(RESULTS);
Could somebody help me do this on a faster way?
Thanks!