Re^2: Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.

[suchetana]

in reply to Re: Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.
in thread Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.

See what I have is suppose TATGCATGGCATATATATACGTACGTATGCATATATATGCTAA. I want to find the substring that has ATG......TAA while reading from the first T Then I want it to start reading from the second alphabet and find the substring having ATG...TAA and again then the same thing from T to get ATG....TAA. Also, I then need to store these three substrings in three different scalars/arrays. Then I need to translate them, like if the first three are ATG it should return say M, then it reads the next 3 characters of that substring and say it is CAT. Then it will return X say. Likewise. How do I go about? Please please help

[frozenwithjoy]

Here you go: Six-Frame Translation.

But seriously, why not just use Bio::Seq? It has a translate method.