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Re^2: Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.

by suchetana
on Feb 13, 2013 at 19:18 UTC ( #1018607=note: print w/ replies, xml ) Need Help??


in reply to Re: Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.
in thread Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.

See what I have is suppose TATGCATGGCATATATATACGTACGTATGCATATATATGCTAA. I want to find the substring that has ATG......TAA while reading from the first T Then I want it to start reading from the second alphabet and find the substring having ATG...TAA and again then the same thing from T to get ATG....TAA. Also, I then need to store these three substrings in three different scalars/arrays. Then I need to translate them, like if the first three are ATG it should return say M, then it reads the next 3 characters of that substring and say it is CAT. Then it will return X say. Likewise. How do I go about? Please please help


Comment on Re^2: Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.
Re^3: Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.
by frozenwithjoy (Curate) on Feb 13, 2013 at 22:50 UTC

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