use strict; use warnings; my $str = 'xxxx yy zzzzz xxxx qqq xxxx vv zzzzz wwww ppp'; my @lengths = qw/2 4 3/; my @seqs = getSequences( $str, @lengths ); print "@$_\n" for @seqs; sub getSequences { my ( $string, @lengths ) = @_; my ( $i, @sequences ) = 0; my $re = join '\b.+?\b', map { $i++; "(?[a-z]{$_})" } @lengths; push @sequences, [ map $+{"C$_"}, 1 .. @lengths ] while $string =~ /\b$re\b/ig; return @sequences; }