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Re: How To Parse a BLAST data file

by bioinformatics (Friar)
on Apr 29, 2013 at 15:59 UTC ( #1031250=note: print w/ replies, xml ) Need Help??


in reply to How To Parse a BLAST data file

This is where I would recommend using bioperl. You can find the modules here: http://bioperl.org/wiki/Main_Page. Specific examples for parsing blast searches are here: http://bioperl.org/wiki/HOWTO:SearchIO#Using_SearchIO. If you don't have administrative permissions on the machine you are using, you can clone the git repository and export the location to $PERL5LIB.


Bioinformatics


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