Beefy Boxes and Bandwidth Generously Provided by pair Networks
We don't bite newbies here... much

Re: Analysing a (binary) string.

by BerntB (Deacon)
on Jun 28, 2013 at 10:01 UTC ( #1041207=note: print w/replies, xml ) Need Help??

in reply to Analysing a (binary) string. (Solved)

This wasn't a bio problem, but... could someone that knows bioperl/DNA sequencing comment on the possibility of this methodology?

  1. Chop up the long binary string into substrings
  2. Encode the bytes as DNA base pairs
  3. Use existing alignment implementations for DNA sequences

You'd probably want to do that with different size substrings, of course. (And yeah, this would be using a screwdriver as a saw, or something.)

Log In?

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://1041207]
and the web crawler heard nothing...

How do I use this? | Other CB clients
Other Users?
Others musing on the Monastery: (5)
As of 2016-10-25 05:12 GMT
Find Nodes?
    Voting Booth?
    How many different varieties (color, size, etc) of socks do you have in your sock drawer?

    Results (315 votes). Check out past polls.