Beefy Boxes and Bandwidth Generously Provided by pair Networks
go ahead... be a heretic
 
PerlMonks  

Re^2: Iso electric point calculation using perl

by yuvraj_ghaly (Sexton)
on Jul 22, 2013 at 05:23 UTC ( #1045586=note: print w/ replies, xml ) Need Help??


in reply to Re: Iso electric point calculation using perl
in thread Iso electric point calculation using perl

Thank tou chris. I have two queries: First, what command have you input on console screen? Second, thoe code for correction is still giving problem...this time it says "use of uninitialsed value at 104 & 107 line"...


Comment on Re^2: Iso electric point calculation using perl
Replies are listed 'Best First'.
Re^3: Iso electric point calculation using perl
by Cristoforo (Deacon) on Jul 22, 2013 at 16:09 UTC
    The command at the console was perl your_prog_name.pl fasta_input_file.fasta. I don't know what lines 104 and 107 are. Please put them here.

      line 104

            $result += $acid{$aa}/(1+10**($pka{$aa}-$pI));

      line 107

            $result -= $base{$aa}/(1+10**($pI-$pka{$aa}));

        You must have forgotten to declare those variables. If you run it without using strict it won't raise an error.

Log In?
Username:
Password:

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://1045586]
help
Chatterbox?
and the web crawler heard nothing...

How do I use this? | Other CB clients
Other Users?
Others about the Monastery: (16)
As of 2015-07-29 14:23 GMT
Sections?
Information?
Find Nodes?
Leftovers?
    Voting Booth?

    The top three priorities of my open tasks are (in descending order of likelihood to be worked on) ...









    Results (263 votes), past polls