Beefy Boxes and Bandwidth Generously Provided by pair Networks RobOMonk
laziness, impatience, and hubris
 
PerlMonks  

Re^3: Iso electric point calculation using perl

by Cristoforo (Chaplain)
on Jul 22, 2013 at 16:09 UTC ( #1045687=note: print w/ replies, xml ) Need Help??


in reply to Re^2: Iso electric point calculation using perl
in thread Iso electric point calculation using perl

The command at the console was perl your_prog_name.pl fasta_input_file.fasta. I don't know what lines 104 and 107 are. Please put them here.


Comment on Re^3: Iso electric point calculation using perl
Download Code
Re^4: Iso electric point calculation using perl
by yuvraj_ghaly (Sexton) on Jul 23, 2013 at 04:19 UTC

    line 104

          $result += $acid{$aa}/(1+10**($pka{$aa}-$pI));

    line 107

          $result -= $base{$aa}/(1+10**($pI-$pka{$aa}));

      You must have forgotten to declare those variables. If you run it without using strict it won't raise an error.

        thank you

Log In?
Username:
Password:

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://1045687]
help
Chatterbox?
and the web crawler heard nothing...

How do I use this? | Other CB clients
Other Users?
Others studying the Monastery: (8)
As of 2014-04-23 22:09 GMT
Sections?
Information?
Find Nodes?
Leftovers?
    Voting Booth?

    April first is:







    Results (556 votes), past polls