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Re: Looking for Printing all possible combinations

by choroba (Cardinal)
on Feb 13, 2015 at 09:56 UTC ( [id://1116599]=note: print w/replies, xml ) Need Help??


in reply to Looking for Printing all possible combinations

Here's a simple recursive solution (read the comments for explanation):
#!/usr/bin/perl use warnings; use strict; sub alternate { my ($id, $string, @changes) = @_; unless (@changes) { print "$id $string\n"; return } # The variant with the original character. my ($bracket, $char) = @{ shift @changes }; alternate($id, $string, @changes); # The variant with the alternative character. $string =~ /\(/g for 1 .. $bracket; # Find the bracket. substr $string, pos $string, 1, $char; alternate($id, $string, @changes); } open my $STRINGS, '<', 'File1' or die $!; open my $ALTS, '<', 'File2' or die $!; while (my $string_line = <$STRINGS>) { my ($string_id, $string) = split ' ', $string_line; # Count the bracketed parts. my $count = ((my $bare_string = $string) =~ s/[()]//g) / 2; my @changes; for my $bracket (1 .. $count) { my $alt_line = <$ALTS>; my ($alt_id, $pos, $orig, $alt) = split ' ', $alt_line; die "Out of sync: $string_id != $alt_id\n" if $string_id ne $a +lt_id; my $char = substr $bare_string, $pos - 1, 1; die "Invalid char at pos $pos in $string_id: $orig != $char\n" if $orig ne $char; push @changes, [ $bracket, $alt ]; } alternate($string_id, $string, @changes); }

It might be a bit too complex for a newbie, but the task is not really simple, either.

لսႽ† ᥲᥒ⚪⟊Ⴙᘓᖇ Ꮅᘓᖇ⎱ Ⴙᥲ𝇋ƙᘓᖇ

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Re^2: Looking for Printing all possible combinations
by sarkar (Initiate) on Feb 13, 2015 at 13:24 UTC
    Hello choroba, Thank you very much. I highly appreciate. I am trying to understand the code. But I have one question. I have multiple positions with Brackets (for example I have given 3). What do I need to modify so that it works for multiple brackets in File1 and many such strings in file2. I have around 1million entries in File2. Many Thanks.
      The code given here generates exactly the output you requested. Do you understand recursion?
      لսႽ† ᥲᥒ⚪⟊Ⴙᘓᖇ Ꮅᘓᖇ⎱ Ⴙᥲ𝇋ƙᘓᖇ
        Yes Recursion I understand as a concept. But I am a bit clueless here how to use recursion here?
      Like for Example In File 1: I have given string2 T(A)GG(A)GGG(G) But it can have multiple brackets in different strings such as TAA(A)G(T)G(A)GGAG(G)CCA(A) How does it work? What should I modify in the code? And also my File2 is really big with a million Entries.
        Also I have am facing another problem. If there are 3 Brackets I am looking for all possible combinations between the 3. So if i have 4 Brackets I would be looking for all the possible combinations between those 4. If there are "n" Brackets I would be looking for all the possible combinations between the ones ie, "n" in the brackets.

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