Beefy Boxes and Bandwidth Generously Provided by pair Networks
We don't bite newbies here... much
 
PerlMonks  

Re^5: Get Fasta file with Protein Sequences given a file with Genbank Ids using Perl

by kevbot (Vicar)
on Mar 21, 2016 at 05:39 UTC ( [id://1158409]=note: print w/replies, xml ) Need Help??


in reply to Re^4: Get Fasta file with Protein Sequences given a file with Genbank Ids using Perl
in thread Get Fasta file with Protein Sequences given a file with Genbank Ids using Perl

You have not written a subroutine for write_sequence and the Bio::DB::Genbank module does not provide this method. It's likely that you want to add this to your code:
use Bio::Perl;
as the Bio::Perl module does provide a write_sequence method. I recommend that you carefully read the documentation for Bio::DB::Genbank and Bio::Perl.
  • Comment on Re^5: Get Fasta file with Protein Sequences given a file with Genbank Ids using Perl
  • Download Code

Log In?
Username:
Password:

What's my password?
Create A New User
Domain Nodelet?
Node Status?
node history
Node Type: note [id://1158409]
help
Chatterbox?
and the web crawler heard nothing...

How do I use this?Last hourOther CB clients
Other Users?
Others contemplating the Monastery: (4)
As of 2024-04-19 23:08 GMT
Sections?
Information?
Find Nodes?
Leftovers?
    Voting Booth?

    No recent polls found