Beefy Boxes and Bandwidth Generously Provided by pair Networks
Your skill will accomplish
what the force of many cannot
 
PerlMonks  

YALH Re: An imperfect pattern matcher writer

by jeroenes (Priest)
on Oct 02, 2001 at 19:49 UTC ( #116159=note: print w/replies, xml ) Need Help??


in reply to An imperfect pattern matcher writer

Yet Another Look-Here:

Have you checked out Clustalw? In general, http://bio.perl.org might contain lotta handy stuff for you. Including nice BLAST interfaces etc. etc. You can also do a 'bio'-search on cpan (which is your friend, naturally).

Cheers,

Jeroen

  • Comment on YALH Re: An imperfect pattern matcher writer

Replies are listed 'Best First'.
Re: YALH Re: An imperfect pattern matcher writer
by scain (Curate) on Oct 02, 2001 at 20:04 UTC
    jeroen,

    Yes, I should have mentioned bioperl in the original text. I am familar with it; we use it for some things, noteably BLAST parsing (in fact, we provided an improved version of BPlite to the author). I am also familar with clustal, but did not feel quite like the right tool for the job. Thanks for the YALH.

    Scott

Log In?
Username:
Password:

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://116159]
help
Chatterbox?
[marto]: good morning all
[Corion]: Hi marto ;)
[Corion]: I hope you're well ;)
[marto]: running late today, get to work and people are just sitting around. "can't delete file, quota exceeded"
[Corion]: marto: Oy :-/
[Corion]: Ah, it's only "quota exceeded", not "filesystem full", so it's "merely" an administrative act to up the FS quota resp. inode quota

How do I use this? | Other CB clients
Other Users?
Others musing on the Monastery: (7)
As of 2017-01-24 09:53 GMT
Sections?
Information?
Find Nodes?
Leftovers?
    Voting Booth?
    Do you watch meteor showers?




    Results (203 votes). Check out past polls.