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YALH Re: An imperfect pattern matcher writer

by jeroenes (Priest)
on Oct 02, 2001 at 19:49 UTC ( #116159=note: print w/replies, xml ) Need Help??


in reply to An imperfect pattern matcher writer

Yet Another Look-Here:

Have you checked out Clustalw? In general, http://bio.perl.org might contain lotta handy stuff for you. Including nice BLAST interfaces etc. etc. You can also do a 'bio'-search on cpan (which is your friend, naturally).

Cheers,

Jeroen

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Re: YALH Re: An imperfect pattern matcher writer
by scain (Curate) on Oct 02, 2001 at 20:04 UTC
    jeroen,

    Yes, I should have mentioned bioperl in the original text. I am familar with it; we use it for some things, noteably BLAST parsing (in fact, we provided an improved version of BPlite to the author). I am also familar with clustal, but did not feel quite like the right tool for the job. Thanks for the YALH.

    Scott

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[marioroy]: choroba++, Discipulus++. It depends on the type of module. Data-type "only" modules are likely multi-process safe, re: Hash::Ordered, Tie::IxHash.
[marioroy]: ... when shared via MCE::Share-> share(...)
[marioroy]: Net type modules are likely not multi-process safe unless stated in the documentation.
[marioroy]: The Prima author fixed his module to be both thread and multi-process safe. Thanks Dmitry.
[marioroy]: Of all the GUI-type modules, Prima was the worst regarding thread/multi- process safety. Now, it's the best for safety. ;-)
[marioroy]: Tk, Gtk2, Gtk3 requires extra care.
[marioroy]: I was unable to run parallel with Win32::Console. Fortunately, running parallel behind Win32::API is possible.

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