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Re^4: Command or Perl script for changing headers of multiple FASTA files in a specific order listed in a txt file

by Anonymous Monk
on Sep 12, 2017 at 12:08 UTC ( [id://1199192]=note: print w/replies, xml ) Need Help??

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  1. or download this
     Chimpanzee_AMY2B_CDS.fasta                 MP.C_AMY2B
Human_AMY2B_CDS.fasta                      FP.H_AMY2B
  2. or download this
     for i in $(seq 1 $(ls *.fasta |wc -l)); do sed -n "$i"p headers.txt| sed 's/^/>/'> test/$(ls *.fasta| sed -n "$i"p); cat $(ls *.fasta| sed -n "$i"p)| sed '1d' >>test/$(ls *.fasta| sed -n "$i"p); done
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