Beefy Boxes and Bandwidth Generously Provided by pair Networks
Clear questions and runnable code
get the best and fastest answer
 
PerlMonks  

Re: File::Wrap and Fasta format

by aging acolyte (Pilgrim)
on Mar 13, 2003 at 12:21 UTC ( #242666=note: print w/replies, xml ) Need Help??


in reply to File::Wrap and Fasta format

I have always liked a simple regex to format for fasta

for 80 nt per line:

$seq =~ s/([^\n]{80}|[^\n]{1,79}$)/$1\n/g; print $out ">$description\n$seq"; close $out;

A.A.

Log In?
Username:
Password:

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://242666]
help
Chatterbox?
NodeReaper stumbles on his way to the attic

How do I use this? | Other CB clients
Other Users?
Others pondering the Monastery: (2)
As of 2017-05-28 03:14 GMT
Sections?
Information?
Find Nodes?
Leftovers?
    Voting Booth?