#!/usr/bin/perl
$line=$ARGV[0];
$name=$ARGV[1];
chomp($line);
chomp($name);

$amino="ABC";
@cc=split(//,$amino);

    $line=~ s/[\s]//g;
    @prot=split(//,$line);
    $len=@prot;
open(NAS,">>$name");
print NAS"0";
close NAS;
open(MAJ,"valfile");

while($li=<MAJ>){
        chomp($li);
        $val="";
        @value=split(/ +/,$li);

    for($p=0;$p<@prot;$p++){

    for($a=0;$a<@cc;$a++){
        
    
        if($prot[$p] eq "$cc[$a]"){
    
        $val +=$value[$a];
    
        }
    }

    $val1=$val/$len;
    $val1=sprintf "%5.3f",$val1;
    }
    $number++;        
        open(MAL,">>$name");
        print MAL" $number:$val1";
        close MAL;
      
    }
    close MAJ;
    open(MAL1,">>$name");
    print MAL1"\n";
close MAL1;
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THE PROBLEM WITH ABOVE CODE IS THAT IT TAKES ONLY ONE STRING AT A TIME (i.e. ONLY FIRST LINE) WHILE I WANT TO INPUT MANY STRINGS AT A TIME (IN DIFFEREENT LINES) FOR CALCULATION