Beefy Boxes and Bandwidth Generously Provided by pair Networks
laziness, impatience, and hubris

Re^3: similar string matching

by dakkar (Hermit)
on Jul 05, 2004 at 19:41 UTC ( #371964=note: print w/replies, xml ) Need Help??

in reply to Re^2: similar string matching
in thread similar string matching

Ehm.. I'm not a biologist, I only know someone... so you almost lost me there.

The BLAST and related algorithms do exactly what you asked for: they find all the possible matches between two sequences, ranking them by 'edit distance', i.e. the number of operations needed to obtain a perfect match.

This is really all I know, for details ask an expert ;-)

        dakkar - Mobilis in mobile

Most of my code is tested...

Perl is strongly typed, it just has very few types (Dan)

Log In?

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://371964]
and the web crawler heard nothing...

How do I use this? | Other CB clients
Other Users?
Others pondering the Monastery: (6)
As of 2016-10-27 22:52 GMT
Find Nodes?
    Voting Booth?
    How many different varieties (color, size, etc) of socks do you have in your sock drawer?

    Results (372 votes). Check out past polls.