Beefy Boxes and Bandwidth Generously Provided by pair Networks
Pathologically Eclectic Rubbish Lister

Re: Genbank file parsing

by insaniac (Friar)
on Jan 11, 2005 at 12:47 UTC ( #421262=note: print w/ replies, xml ) Need Help??

in reply to Genbank file parsing

maybe something like:

my $found_origin = 0; while (my $line = <FILE>) { if ($line =~ /(FEATURES)\s+(\w+)/) { $found_origin = 0; $features = $2; } elsif ($line =~ /(COUNT)\s+(\d+)/) { $count = $2; } elsif ($line =~ /^ORIGIN/) { # print "$line\n"; $found_origin=1; } push @seq, "$line\n" if $found_origin and not $line =~ m!//!; }

it's a very simplistic solution.. there are probably better ones...

to ask a question is a moment of shame
to remain ignorant is a lifelong shame

Comment on Re: Genbank file parsing
Download Code

Log In?

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://421262]
and the web crawler heard nothing...

How do I use this? | Other CB clients
Other Users?
Others contemplating the Monastery: (4)
As of 2015-11-28 18:10 GMT
Find Nodes?
    Voting Booth?

    What would be the most significant thing to happen if a rope (or wire) tied the Earth and the Moon together?

    Results (743 votes), past polls