Doh! You have to remove the next KEY; statement and it will print all lines.
Genename(file1) start end ** Genename(file2)
+ start end
CLS_S3_Contig2722 375 390 ** CLS_S3_Contig2722
+ 375 390
CLS_S3_Contig2725 323 362 ** CLS_S3_Contig2725
+ 323 362
CLS_S3_Contig2725 455 480 ** CLS_S3_Contig2725
+ 455 480
CLS_S3_Contig2729 119 130 ** CLS_S3_Contig2729
+ 119 130
CLS_S3_Contig2729 163 220 ** CLS_S3_Contig2729
+ 163 220
CLS_S3_Contig2731 824 843 ** CLS_S3_Contig2731
+ 824 843
CLS_S3_Contig2731 1150 1201 ** CLS_S3_Contig2731
+ 1150 1201
CLS_S3_Contig2728 117 144 ** CLS_S3_Contig2728
+ 117 144
CLS_S3_Contig2728 437 472 ** CLS_S3_Contig2728
+ 437 472
CLS_S3_Contig2721 139 168 ** CLS_S3_Contig2721
+ 139 168
CLS_S3_Contig2735 571 636 ** CLS_S3_Contig2735
+ 571 636
CLS_S3_Contig2735 677 710 ** CLS_S3_Contig2735
+ 677 710
CLS_S3_Contig2735 775 810 ** CLS_S3_Contig2735
+ 775 810
CLS_S3_Contig2730 181 202 ** CLS_S3_Contig2730
+ 181 202
CLS_S3_Contig2730 361 384 ** CLS_S3_Contig2730
+ 361 384
--
seek $her, $from, $everywhere if exists $true{love};
