Beefy Boxes and Bandwidth Generously Provided by pair Networks
Welcome to the Monastery
 
PerlMonks  

Re^2: how to process very large tab limited pileup file

by gudluck (Novice)
on Oct 06, 2010 at 23:20 UTC ( #863885=note: print w/replies, xml ) Need Help??

Help for this page

Select Code to Download


  1. or download this
    
    >input.fasta
    GATCCccagagcgttGAwgcttAgacTCCgagc
    
  2. or download this
     
    
    #!/usr/bin/perl 
    ...
    Command: pileup2markedfasta     generate maked.fasta from `pileup -c r
    +aw pileup'
    \n/);
    }
    
  3. or download this
    2L    1    G    A    48    48    26    7    AAaaAAA    ACCCD?@
    2L    2    A    A    48    0    26    7    ..,,...    AACC@BC
    ...
    2L    32    g    G    90    0    37    21    .,..,,.,,.,,,,,,,,,,^F.  
    +  CDCCCAC@@CDDCC<:DBABC
    2L    33    c    C    117    0    14    31    ...,,*.,,-2gt.,,.,,.,...
    +.......,,..    ;B6CCBBCBCACDCCCB@DCDCC8CCCABCC
    
  4. or download this
    >input.fasta
    GATCCccagagcgttGAwgcttAgacTCCgagc
    >input.fasta
    AAKMMCYA----GNTGMTGCTTARWC----AGC
    

Log In?
Username:
Password:

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://863885]
help
Chatterbox?
and all is quiet...

How do I use this? | Other CB clients
Other Users?
Others rifling through the Monastery: (5)
As of 2017-10-21 07:33 GMT
Sections?
Information?
Find Nodes?
Leftovers?
    Voting Booth?
    My fridge is mostly full of:

















    Results (269 votes). Check out past polls.

    Notices?