Re^3: how to construct multiple sequence alignment from group of pairwise alignments


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Re^3: how to construct multiple sequence alignment from group of pairwise alignments

by BrowserUk (Patriarch)

on Oct 19, 2010 at 18:48 UTC ( [id://866154]=note: print w/replies, xml )

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in reply to Re^2: how to construct multiple sequence alignment from group of pairwise alignments
in thread how to construct multiple sequence alignment from group of pairwise alignments

Are you saying you have (are given) the pairwise alignments (as strings with dashes) and all you need to produce is the "Final Multiple sequence alignment"?

Also, it there a typo?

............V
Ref1: CGACAAT--GCACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTCTCATTTTCTCTCCC
Seq1: CGACAAAAAGCACGACAGAGGAAGCAGAACAGATA-----ATTGCCTCTCATTTTC-CTCCC
............^
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Re^4: how to construct multiple sequence alignment from group of pairwise alignments by gudluck (Novice) on Oct 19, 2010 at 21:09 UTC
yes need to generate MSA from the set of pairwise alignment. Thanks for informing the typo. Any how I am not looking similarity/identity of the nuceotides at various positions.	[reply]

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