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Re^3: Install Math::GSL fail

by Eliya (Vicar)
on Mar 04, 2011 at 18:28 UTC ( #891496=note: print w/ replies, xml ) Need Help??


in reply to Re^2: Install Math::GSL fail
in thread Install Math::GSL fail

GSL does not appear in /usr/local/pkgconfig, but it is installed

Maybe you need to install the respective *-dev package for the GSL library (?)

Not entirely sure about Fedora, but most distros split their library packages into two parts: one for the runtime libs (always needed), and one for the "development stuff" (with the package name usually ending in "-dev" or "-devel"), like header files, static libs, the package config (".pc") file, etc., which are only needed if you build software that links against the library in question.


Comment on Re^3: Install Math::GSL fail
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Re^4: Install Math::GSL fail
by cormanaz (Chaplain) on Mar 04, 2011 at 22:47 UTC
    Yes that was it. But now I am getting a bunch of warnings from GCC, and make test fails a couple. To wit:
    cpan[1]> install Math::GSL Going to read '/root/.cpan/Metadata' Database was generated on Fri, 04 Mar 2011 10:27:20 GMT Running install for module 'Math::GSL' Running make for L/LE/LETO/Math-GSL-0.22.tar.gz Checksum for /root/.cpan/sources/authors/id/L/LE/LETO/Math-GSL-0.22.ta +r.gz ok Scanning cache /root/.cpan/build for sizes ...................................................................... +......DONE CPAN.pm: Going to build L/LE/LETO/Math-GSL-0.22.tar.gz Checking for GSL..Found GSL version 1.14 Checking if gcc supports "-Wall"...yes Checking if gcc supports "-Wno-unused-function"...yes Checking if gcc supports "-Wno-unused-value"...yes Checking if gcc supports "-Wno-unused-function"...yes Checking if gcc supports "-Wno-unused-variable"...yes Checking if gcc supports "-g"...yes Creating new 'MYMETA.yml' with configuration results Creating new 'Build' script for 'Math-GSL' version '0.22' Have a great day! Building Math-GSL xs/Multiroots_wrap.c: In function ‘_wrap_gsl_multiroot_fdjacobian’: xs/Multiroots_wrap.c:2339:12: warning: assignment from incompatible po +inter type xs/Multiroots_wrap.c: In function ‘_wrap_gsl_multiroot_fsolver_functio +n_set’: xs/Multiroots_wrap.c:2902:12: warning: assignment from incompatible po +inter type xs/Multiroots_wrap.c: In function ‘_wrap_gsl_multiroot_fsolver_set’: xs/Multiroots_wrap.c:3337:12: warning: assignment from incompatible po +inter type xs/Roots_wrap.c: In function ‘_wrap_gsl_root_fdfsolver_fdf_set’: xs/Roots_wrap.c:3213:23: warning: character constant too long for its +type xs/Roots_wrap.c:3213:7: warning: passing argument 2 of ‘fprintf’ makes + pointer from integer without a cast /usr/include/stdio.h:355:12: note: expected ‘const char * __restrict__ +’ but argument is of type ‘int’ xs/Roots_wrap.c:3214:7: warning: ‘return’ with a value, in function re +turning void xs/Roots_wrap.c: In function ‘_wrap_gsl_root_fdfsolver_set’: xs/Roots_wrap.c:3776:23: warning: character constant too long for its +type xs/Roots_wrap.c:3776:7: warning: passing argument 2 of ‘fprintf’ makes + pointer from integer without a cast /usr/include/stdio.h:355:12: note: expected ‘const char * __restrict__ +’ but argument is of type ‘int’ xs/Roots_wrap.c:3777:7: warning: ‘return’ with a value, in function re +turning void LETO/Math-GSL-0.22.tar.gz ./Build -- OK Running Build test t/00-load.t ........ 1/52 # Testing Math::GSL 0.22 on i386-linux-threa +d-multi, Perl (/usr/bin/perl) 5.012003 t/00-load.t ........ ok t/01-pod.t ......... skipped: Test::Pod 1.00 required for testing POD t/BLAS.t ........... 1/109 Elements start differing at index 0, delta = 8.9263593745227e+195 $x->[0] = 8.9263593745227e+195 $y->[0] = 50 Elements start differing at index 0, delta = 7.43864376780752e+195 $x->[0] = 7.43864376780752e+195 $y->[0] = 34 Elements start differing at index 0, delta = 4.42423204080942e+214 $x->[0] = -4.42423204080942e+214 $y->[0] = 24 Elements start differing at index 0, delta = 4.22125628458722e+200 $x->[0] = 4.22125628458722e+200 $y->[0] = 46 Elements start differing at index 0, delta = 3.51771357048935e+200 $x->[0] = 3.51771357048935e+200 $y->[0] = 34 Elements start differing at index 0, delta = 24 $x->[0] = -8.0780671462807e-27 $y->[0] = 24 t/BLAS.t ........... ok t/BSpline.t ........ ok t/CBLAS.t .......... ok t/CDF.t ............ 1/794 # Failed test 'gsl_cdf_tdist_Qinv (3.18309885122757724e-5, 1.0) ?= 9 +999.99999999054, # res= +-9.45874489843845e-09, eps=2.3283064365387e-10' # at t/CDF.t line 834. # Failed test 'gsl_cdf_tdist_Pinv (3.18309885122757724e-5, 1.0) ?= - +9999.99999999054, # res= +-9.45874489843845e-09, eps=2.3283064365387e-10' # at t/CDF.t line 834. # Looks like you failed 2 tests of 794. t/CDF.t ............ Dubious, test returned 2 (wstat 512, 0x200) Failed 2/794 subtests t/Chebyshev.t ...... ok t/Combination.t .... ok t/Complex.t ........ ok t/Const.t .......... ok t/DHT.t ............ ok t/Deriv.t .......... ok t/Eigen.t .......... ok t/Errno.t .......... ok t/FFT.t ............ ok t/Fit.t ............ ok t/GSL.t ............ 1/18 Elements start differing at index 2, delta = 0.00099999999999989 $x->[2] = 3 $y->[2] = 3.001 Elements start differing at index 2, delta = 9.99999998363421e-08 $x->[2] = 3.0010001 $y->[2] = 3.0010002 t/GSL.t ............ ok t/Heapsort.t ....... ok t/Histogram.t ...... ok t/Histogram2D.t .... ok t/IEEEUtils.t ...... ok t/Integration.t .... ok t/Interp.t ......... ok t/Linalg.t ......... 1/70 Elements start differing at index 0, delta = 6 $x->[0] = -0 $y->[0] = -6 Elements start differing at index 0, delta = 8 $x->[0] = -4 $y->[0] = 4 t/Linalg.t ......... ok t/Machine.t ........ ok t/Matrix.t ......... 1/238 Elements start differing at index 1, delta = 0.707106781186548 $x->[1] = 4.32963728535968e-17 $y->[1] = -0.707106781186548 Elements start differing at index 1, delta = 0.707106781186548 $x->[1] = 4.32963728535968e-17 $y->[1] = 0.707106781186548 t/Matrix.t ......... 109/238 Elements start differing at index 1, delta = 1 $x->[1] = 3 $y->[1] = 2 t/Matrix.t ......... ok t/MatrixComplex.t .. 1/38 Elements start differing at index 1, delta = 1 $x->[1] = 3 $y->[1] = 4 Elements start differing at index 1, delta = 1 $x->[1] = 3 $y->[1] = 2 t/MatrixComplex.t .. ok t/Min.t ............ ok t/Monte.t .......... 1/15 Elements start differing at index 0, delta = 2.78505685129308e+16 $x->[0] = 0.333333333333333 $y->[0] = 2.78505685129308e+16 t/Monte.t .......... ok t/Multifit.t ....... ok t/Multimin.t ....... ok t/Multiroots.t ..... ok t/NTuple.t ......... 1/11 This is the end at t/NTuple.t line 14. t/NTuple.t ......... ok t/ODEIV.t .......... ok t/Permutation.t .... ok t/Poly.t ........... Elements start differing at index 0, delta = 4 $x->[0] = 0 $y->[0] = 4 t/Poly.t ........... 1/7 Elements start differing at index 0, delta = 0.674 $x->[0] = 0 $y->[0] = 0.674 t/Poly.t ........... ok t/PowInt.t ......... ok t/QRNG.t ........... ok t/RNG.t ............ ok t/Randist.t ........ ok t/Roots.t .......... ok t/SF.t ............. ok t/Siman.t .......... ok t/Sort.t ........... ok t/Spline.t ......... ok t/Statistics.t ..... ok t/Sum.t ............ ok t/Sys.t ............ ok t/Vector.t ......... 1/142 Elements start differing at index 0, delta = 9 $x->[0] = 1 $y->[0] = 10 Elements start differing at index 0, delta = 9 $x->[0] = 1 $y->[0] = 10 t/Vector.t ......... ok t/VectorComplex.t .. ok t/Wavelet.t ........ ok t/Wavelet2D.t ...... ok Test Summary Report ------------------- t/CDF.t (Wstat: 512 Tests: 794 Failed: 2) Failed tests: 481, 523 Non-zero exit status: 2 t/Matrix.t (Wstat: 0 Tests: 238 Failed: 0) TODO passed: 209-212 t/Vector.t (Wstat: 0 Tests: 142 Failed: 0) TODO passed: 141-142 Files=52, Tests=3578, 18 wallclock secs ( 1.53 usr 0.27 sys + 13.75 c +usr 1.58 csys = 17.13 CPU) Result: FAIL Failed 1/52 test programs. 2/3578 subtests failed. LETO/Math-GSL-0.22.tar.gz ./Build test -- NOT OK //hint// to see the cpan-testers results for installing this module, t +ry: reports LETO/Math-GSL-0.22.tar.gz Running Build install make test had returned bad status, won't install without force Failed during this command: LETO/Math-GSL-0.22.tar.gz : make_test NO
      Note that there's only 1 failing test script (namely t/CDF.t) and that it fails only 2 tests (tests 481 and 523).
      All the other stuff is in relation to 'TODO' tests, and they don't count as failures.

      On MS Windows, I get the same 2 failing tests as you get - I haven't yet investigated further.

      Looks to me that you've got a fairly good build of Math::GSL - why not just force install it and see how it goes for you ?

      Cheers,
      Rob
      I get the same errors on Mac OSx 10.8.2 and gcc 4.6.3 :
      xs/Roots_wrap.1.15.c:3283:7: error: void function '_wrap_gsl_root_fdfs +olver_fdf_set' should not return a value [-Wreturn-type] return (gsl_nan()); ^ ~~~~~~~~~~~ ... xs/Roots_wrap.1.15.c:3840:7: error: void function '_wrap_gsl_root_fdfs +olver_set' should not return a value [-Wreturn-type] return (gsl_nan()); ^ ~~~~~~~~~~~
      This thread is a bit old. I wonder if anybody has made any progress on this?

        This thread is a bit old. I wonder if anybody has made any progress on this?

        Progress such as?

        return (gsl_nan());

        That looks wrong to me, too - I think that the value returned by gsl_nan() needs instead to be pushed onto the stack and returned using XSRETURN() ... but I don't have time to test, tonight.

        Cheers,
        Rob

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