Beefy Boxes and Bandwidth Generously Provided by pair Networks
Do you know where your variables are?

Re^2: PBS not finding file.

by Jeri (Scribe)
on Sep 27, 2011 at 19:09 UTC ( #928149=note: print w/replies, xml ) Need Help??

in reply to Re: PBS not finding file.
in thread PBS not finding file.

Your guess is correct! I had a hard time explaining that, yes, the argument should be passed from the qsub script, but it's not. I tried your code. It kills the script, as expected.

Replies are listed 'Best First'.
Re^3: PBS not finding file.
by Jeri (Scribe) on Sep 27, 2011 at 19:11 UTC
    Correction. The argument is not being passed from the qsub script, but should be.

      Let me use my crystal ball again... are you trying to run the "qsub script" from the first code sample and get it's output? If so, use backticks.

      my $PBS_ARRAYID = '123' ; my @output = `/usr/bin/perl /chongle/jeri/timecheck/ $PBS_ +ARRAYID > /chongle/jeri/timecheck/output.$PBS_ARRAYID.txt 2> /chongle +/jeri/timecheck/error.$PBS_ARRAYID.txt` ;

Log In?

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://928149]
and all is quiet...

How do I use this? | Other CB clients
Other Users?
Others drinking their drinks and smoking their pipes about the Monastery: (6)
As of 2018-03-21 08:16 GMT
Find Nodes?
    Voting Booth?
    When I think of a mole I think of:

    Results (265 votes). Check out past polls.