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Re^4: PBS not finding file.

by onelesd (Pilgrim)
on Sep 27, 2011 at 21:16 UTC ( #928187=note: print w/ replies, xml ) Need Help??


in reply to Re^3: PBS not finding file.
in thread PBS not finding file.

Let me use my crystal ball again... are you trying to run the "qsub script" from the first code sample and get it's output? If so, use backticks.

my $PBS_ARRAYID = '123' ; my @output = `/usr/bin/perl /chongle/jeri/timecheck/MUSCLEHMM.pl $PBS_ +ARRAYID > /chongle/jeri/timecheck/output.$PBS_ARRAYID.txt 2> /chongle +/jeri/timecheck/error.$PBS_ARRAYID.txt` ;

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