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Re^2: fasta file

by PrincePerl (Novice)
on Sep 29, 2011 at 20:29 UTC ( #928662=note: print w/replies, xml ) Need Help??


in reply to Re: fasta file
in thread fasta file

Hello BrowerUk, I really appreicate the feedback, I was doing the wrong thing all along by not looking through the code. i finally figured it out. This was my revised code. Thanks again.

#!/usr/bin/perl -w use strict; my $filename; my $accession_id; my %accession; my $gene_Name; print "Please enter in the filename: "; chomp($filename = <STDIN>); print "Please enter in the accession_ID: "; chomp($accession_id = <STDIN>); open(FILENAME, $filename) or die "cannot open file: $! "; while($_ = <FILENAME>) { if ($_ =~ />gi/) { $gene_Name = $_; } else { } $accession{$gene_Name} .= $_; } foreach $gene_Name (keys %accession) { if ($gene_Name =~ /$accession_id/i) { print "$accession{$gene_Name}\n"; } }

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[GotToBTru]: I
[GotToBTru]: ve been looking at a document we have been sending to a customer for years now
[MidLifeXis]: We don't, at least in this case ;-)
[GotToBTru]: and it includes a reference number that I didnt recognize
[GotToBTru]: I had to dig into the code to find out where it came from .. and it makes no sense
[GotToBTru]: so I emailed my contact asking if we could just stop sending it .. I'm afraid she is going to ask "what is that anyway?"
[MidLifeXis]: heh.
[MidLifeXis]: Most likely it is a code that some undocumented system, hidden behind layers of IT, deep in the bowels of the building under the machine room floor, reads that code to keep a presence switch from going off. :-b

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