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DN/DS ratio calculator

by ZWcarp (Beadle)
on Oct 10, 2011 at 18:42 UTC ( #930690=perlquestion: print w/replies, xml ) Need Help??
ZWcarp has asked for the wisdom of the Perl Monks concerning the following question:

Hello Monks, I have to complete a project involving the calculation of synonymous versus non-synonomous mutations present in a sequence dataset when compared to a particular reference sequence. The idea would be to compare a reference sequence to an alignment and get information about each mutation that arrises. Does anyone know of a good Bioperl module or some other perl based script that would be of use in calculating Non-synonomous/ synonomous for an alignment? Any help would be greatly appreciated. Thanks!

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Re: DN/DS ratio calculator
by Khen1950fx (Canon) on Oct 11, 2011 at 00:55 UTC
      Perfect thanks!

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