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DN/DS ratio calculator

by ZWcarp (Beadle)
on Oct 10, 2011 at 18:42 UTC ( #930690=perlquestion: print w/replies, xml ) Need Help??
ZWcarp has asked for the wisdom of the Perl Monks concerning the following question:

Hello Monks, I have to complete a project involving the calculation of synonymous versus non-synonomous mutations present in a sequence dataset when compared to a particular reference sequence. The idea would be to compare a reference sequence to an alignment and get information about each mutation that arrises. Does anyone know of a good Bioperl module or some other perl based script that would be of use in calculating Non-synonomous/ synonomous for an alignment? Any help would be greatly appreciated. Thanks!

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Re: DN/DS ratio calculator
by Khen1950fx (Canon) on Oct 11, 2011 at 00:55 UTC
      Perfect thanks!

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Node Type: perlquestion [id://930690]
Approved by Corion
LanX thx Lanx
[shmem]: python sucks
[LanX]: keep your sexlife private, please!
[LanX]: ;-p
shmem spent 3 hours chasing a bug related to variable scoping
[shmem]: is there an equivalent to my in python? or 'use strict' ?
[LanX]: I doubt

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