Re^5: mismatching characters in dna sequence

Hm. The first and most obvious problem is you've forgotten my here:

    my( $ref, $matches, $query ) = $read->padded_alignment;
#...^^
[download]

A more subtle potential problem is not having the shebang line as the first line of the file:

# V5: Inline::C
#!/opt/local/bin/perl
[download]

I don't know what that first line is meant to do, but either delete it or move it below the Inline C code.

Make those two corrections and then see what happens.

You do have a C compiler correctly installed don't you?

With the rise and rise of 'Social' network sites: 'Computers are making people easier to use everyday'

Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error.

"Science is about questioning the status quo. Questioning authority".

In the absence of evidence, opinion is indistinguishable from prejudice.

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Re^6: mismatching characters in dna sequence by prbndr (Acolyte) on Dec 30, 2011 at 20:58 UTC
thanks...this is really quick! it was really the missing "my" that did me in. is there a quick way to tabulate all the respective transitions? e.g. `A:T = 234 A:G = 492 A:C = 273 T:A = 400 ...` [download] and so on... basically output the total number of each type of transition?	[reply] [d/l]
Re^7: mismatching characters in dna sequence by BrowserUk (Patriarch) on Dec 30, 2011 at 21:02 UTC
basically output the total number of each type of transition? Per sequence compared, or for all the sequences? With the rise and rise of 'Social' network sites: 'Computers are making people easier to use everyday' Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error. "Science is about questioning the status quo. Questioning authority". In the absence of evidence, opinion is indistinguishable from prejudice. The start of some sanity?	[reply]
Re^8: mismatching characters in dna sequence by prbndr (Acolyte) on Dec 30, 2011 at 21:05 UTC
for all the sequences	[reply]
Re^9: mismatching characters in dna sequence by BrowserUk (Patriarch) on Dec 30, 2011 at 21:09 UTC
Re^10: mismatching characters in dna sequence by prbndr (Acolyte) on Dec 30, 2011 at 21:24 UTC
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