Old question, but for others who find this page:
I've fixed this problem with Eclipse's EPIC plugin by adding the site/lib directory to the perl command-line like so:
Preferences -> EPIC Perl -> Perl executable:
It looks like EPIC doesn't look at this directory by default, the error above occurred because EPIC only found the native (XS) library associated with the perl module Time::HiRes in the 'perl' area. But you're using an updated version of the library installed in the 'site' area.