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Re^3: motif finding

by devi (Initiate)
on Feb 03, 2012 at 06:08 UTC ( #951604=note: print w/ replies, xml ) Need Help??

in reply to Re^2: motif finding
in thread motif finding

Thank you very much for the reply. In the code that i have used i am giving the input (the motif sequence). considering entire genome as a single string if i want the most repeated elements of say 20 base pairs in the entire string how can i find it?

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Re^4: motif finding
by RichardK (Vicar) on Feb 03, 2012 at 12:47 UTC

    I'm not sure what you're looking for, can you explain with a simple example?

    Are you looking for repeats of given string or something more complex?

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