Beefy Boxes and Bandwidth Generously Provided by pair Networks
Perl: the Markov chain saw

Re^2: Making a hash with groups of IDs

by jemswira (Novice)
on Feb 08, 2012 at 13:00 UTC ( #952487=note: print w/replies, xml ) Need Help??

in reply to Re: Making a hash with groups of IDs
in thread Making a hash with groups of IDs

So my entire project is to use LIBSVM to predict a protein's function. What I have been doing, is taking the Protein database's list of protein numbers (accession numbers, the 6 digit things) and matching them to their PF numbers, which is in what PF groups. The two files i have been using are up there. Now I have managed to get the data in the following format:

B3T3Y0 | PF02517.11 B3T4D5 | PF13371.1 PF13369.1 B3T4G0 | PF13607.1 B3T516 | PF08438.5 B3T517 | PF13207.1 PF13238.1 B3T644 | PF14382.1 B3T662 | PF13248.1 B3T663 | PF13248.1 PF13248.1 PF13240.1

which is what i actually wanted all along. Thanks Count Zero. What i don't know is what to do to put it into LIBSVM, but my groupmate is looking into that. Thanks everyone though!

Log In?

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://952487]
and all is quiet...

How do I use this? | Other CB clients
Other Users?
Others scrutinizing the Monastery: (6)
As of 2017-12-16 02:48 GMT
Find Nodes?
    Voting Booth?
    What programming language do you hate the most?

    Results (447 votes). Check out past polls.