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Re^3: Deconvolutinng FastQ files

by Kenosis (Priest)
on Aug 06, 2012 at 21:15 UTC ( #985838=note: print w/replies, xml ) Need Help??

in reply to Re^2: Deconvolutinng FastQ files
in thread Deconvolutinng FastQ files

Oh, this is sad. I just had the script work on a 1G+ file, and extrapolated the time to about 17hrs of processing for a 34G file. It's not weeks, but it's also not practical. Didn't realize that Tie:File was so inefficient with large files.

Good call to point this out, BrowserUK! Will place an "Update:" in the posting.

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Re^4: Deconvolutinng FastQ files
by snakebites (Initiate) on Aug 07, 2012 at 14:05 UTC
    :D Thank you for the help. Although, it will probably take me a while to understand what you guys are talking about.

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[moritz]: if you don't have .pm file, you might to use "require" or "do" with an absolute path
[ovedpo15]: I need to use FindBin thought. does FindBin finds only modules? or it can find perl script also?
[moritz]: maybe you should start looking at the documentation of FindBin?

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