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Re: Frequency of amino acids from 'ATOM ' of PDB

by Anonymous Monk
on Aug 10, 2012 at 09:07 UTC ( #986695=note: print w/replies, xml ) Need Help??


in reply to Frequency of amino acids from 'ATOM ' of PDB

Here you go ddg://site:perlmonks.org bioperl frequency

See also RFC: Bioinformatics Tutorial, Perl and Bioinformatics

Good luck

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Re^2: Frequency of amino acids from 'ATOM ' of PDB
by RRK on Sep 03, 2012 at 12:04 UTC

    hi,thank you all,the books and links suggested by perl monks have been useful.I could write code.I will uplaod the code if somebody needs it.I need one more help form monks. The problem is,I want to calculate the distance between x,y,z coordinate,from HOH to all other molecules.Then I have to make a table or something like that .The table headings are Serial number of HOH,Serial number of other atoms,Atom name,How many atoms are close to each HOH within 5 angstroms distance. Till now I have calculated the distance and found out all atoms within 5 Angstroms distance.But I unable to format the out put required.Please help me.

      But I unable to format the out put required.Please help me.

      Sure, show your code

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