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Re: Extraction help.

by philiprbrenan (Monk)
on Sep 02, 2012 at 20:12 UTC ( #991324=note: print w/ replies, xml ) Need Help??


in reply to Extraction help.

use feature ":5.14"; use warnings FATAL => qw(all); use strict; use Data::Dump qw(dump pp); my @d = split /\n/, <<'END'; O59734 | Name=smf1; ORFNames=SPBC3E7.14, SPBC4F6.01 Q97W02 | Name=dbh; Synonyms=dpo4; OrderedLocusNames=SSO2448 B0JTM2 | Name=trpC; OrderedLocusNames=MAE_45030 Q0WVE9; Q5XF02; Q9ZVN7 | OrderedLocusNames=At1g05030; ORFNames=T7A14.1 +0 Q15X31 | Name=rraB; OrderedLocusNames=Patl_1031 Q66640 | Name=36 Q9F2S0 | Name=hemL; OrderedLocusNames=SCO4469; ORFNames=SCD65.12 A9R5H1 | Name=dctA; OrderedLocusNames=YpAngola_A4067 Q7N3W0 | Name=rnt; OrderedLocusNames=plu2603 Q6GNW0 | Name=lrrfip2 Q4L4T4 | OrderedLocusNames=SH2032 B7I359 | Name=rplL; OrderedLocusNames=AB57_0368 B2HII2 | Name=leuD; OrderedLocusNames=MMAR_1727 END my $D; for(@d) {my ($c, $d) = split /\s+\|\s+/; $D->{$_} = $d for split /;\s+/, $c; } say $D->{Q9ZVN7}; say $D->{B2HII2};

Produces

OrderedLocusNames=At1g05030; ORFNames=T7A14.10 Name=leuD; OrderedLocusNames=MMAR_1727


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Re^2: Extraction help.
by philiprbrenan (Monk) on Sep 02, 2012 at 21:05 UTC

    Taking things one step further:

    use feature ":5.14"; use warnings FATAL => qw(all); use strict; use Data::Dump qw(dump pp); my @d = split /\n/, <<'END'; O59734 | Name=smf1; ORFNames=SPBC3E7.14, SPBC4F6.01 Q97W02 | Name=dbh; Synonyms=dpo4; OrderedLocusNames=SSO2448 B0JTM2 | Name=trpC; OrderedLocusNames=MAE_45030 Q0WVE9; Q5XF02; Q9ZVN7 | OrderedLocusNames=At1g05030; ORFNames=T7A14.1 +0 Q15X31 | Name=rraB; OrderedLocusNames=Patl_1031 Q66640 | Name=36 Q9F2S0 | Name=hemL; OrderedLocusNames=SCO4469; ORFNames=SCD65.12 A9R5H1 | Name=dctA; OrderedLocusNames=YpAngola_A4067 Q7N3W0 | Name=rnt; OrderedLocusNames=plu2603 Q6GNW0 | Name=lrrfip2 Q4L4T4 | OrderedLocusNames=SH2032 B7I359 | Name=rplL; OrderedLocusNames=AB57_0368 B2HII2 | Name=leuD; OrderedLocusNames=MMAR_1727 END my $D; for(@d) {my ($c, $d) = split /\s+\|\s+/; for(split /;\s+/, $d) {my ($k, $v) = split /=/; $D->{$_}{$k} = $v for split /;\s+/, $c; } } say $D->{Q9ZVN7}{ORFNames}; say $D->{B2HII2}{Name};

    Produces

    T7A14.10 leuD

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