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Problem using miRPara.pl

by Mrigaya (Initiate)
on Sep 24, 2012 at 13:20 UTC ( #995377=perlquestion: print w/ replies, xml ) Need Help??
Mrigaya has asked for the wisdom of the Perl Monks concerning the following question:

Hello, I am using miRPara tool for identification of miRNA sequences. But everytime I run miRPara.pl, it gives me this error
Can't locate Algorithm/SVM.pm in @INC (@INC contains: /home/mrigaya/tc +offee/Version_8.99/perl /home/mrigaya/tcoffee/Version_8.99/perl /etc/ +perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib +/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/ +local/lib/site_perl .) at miRPara.pl line 9. BEGIN failed--compilation aborted at miRPara.pl line 9.
Kindly tell me how to solve this problem

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Re: Problem using miRPara.pl
by pvaldes (Chaplain) on Sep 24, 2012 at 13:30 UTC
    You need to search for a file named SVM.pm in a directory named Algorithm. If not present you should install it.
Re: Problem using miRPara.pl
by marto (Chancellor) on Sep 24, 2012 at 13:30 UTC

    Install the missing module, from the command prompt:

    cpan Algorithm::SVM

    Also please don't ignore the formatting advice displayed when your posting. Thanks.

    Update: The tool you are using has decent documentation, I suggest you read it: https://code.google.com/p/mirpara/wiki/Install

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