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Input:

10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| 100.00 +280 0 0 1 280 3402569 3402290 4e-140 506 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| 99.64 2 +80 1 0 1 280 227880 228159 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| 99.64 2 +80 1 0 1 280 2704973 2704694 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| 99.64 2 +80 1 0 1 280 4018745 4019024 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| 99.64 2 +80 1 0 1 280 4149866 4150145 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| 99.64 2 +80 1 0 1 280 4191268 4191547 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| 98.93 2 +80 3 0 1 280 3924929 3925208 9e-136 491 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| 100.00 2 +80 0 0 1 280 459101 459380 4e-140 506 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| 99.64 28 +0 1 0 1 280 1156698 1156977 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| 99.64 28 +0 1 0 1 280 3643499 3643220 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| 99.64 28 +0 1 0 1 280 4302307 4302028 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| 99.64 28 +0 1 0 1 280 4343709 4343430 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| 99.64 28 +0 1 0 1 280 4474830 4474551 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| 98.93 28 +0 3 0 1 280 4568646 4568367 9e-136 491

Output:

10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| Escheri +chia coli DH1 (ME8569) DNA,... 100.00 280 0 0 1 280 3402569 3402290 4e-140 506 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| Escheri +chia coli DH1 (ME8569) DNA,... 99.64 280 1 0 1 280 227880 228159 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| Escheri +chia coli DH1 (ME8569) DNA,... 99.64 280 1 0 1 280 2704973 2704694 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| Escheri +chia coli DH1 (ME8569) DNA,... 99.64 280 1 0 1 280 4018745 4019024 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| Escheri +chia coli DH1 (ME8569) DNA,... 99.64 280 1 0 1 280 4149866 4150145 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| Escheri +chia coli DH1 (ME8569) DNA,... 99.64 280 1 0 1 280 4191268 4191547 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|315134697|dbj|AP012030.1| Escheri +chia coli DH1 (ME8569) DNA,... 98.93 280 3 0 1 280 3924929 3925208 9e-136 491 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| Escheric +hia coli DH1, complete genome 100.00 280 0 0 1 280 459101 459380 4e-140 506 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| Escheric +hia coli DH1, complete genome 99.64 280 1 0 1 280 1156698 1156977 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| Escheric +hia coli DH1, complete genome 99.64 280 1 0 1 280 3643499 3643220 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| Escheric +hia coli DH1, complete genome 99.64 280 1 0 1 280 4302307 4302028 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| Escheric +hia coli DH1, complete genome 99.64 280 1 0 1 280 4343709 4343430 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| Escheric +hia coli DH1, complete genome 99.64 280 1 0 1 280 4474830 4474551 2e-138 500 10_25_res.txt:Locus3034v1rpkm4.98 gi|260447279|gb|CP001637.1| Escheric +hia coli DH1, complete genome 98.93 280 3 0 1 280 4568646 4568367 9e-136 491

The replacement is done in the s/($regex)/$subst{$1}/ statement, and you can direct the output to a file by:

./program.pl > output_file.txt
There does appear to be a stray carriage return in the output - the code may needs a chomp somewhere...

In reply to Re^3: Replacement of data in a column of a file using Hashes created from another file by space_monk
in thread Replacement of data in a column of a file using Hashes created from another file by rohitmonk

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