If $cell->value() is printing correct value why not replace not working $worksheet->{Cells}[$row][$col]->{Val} with working $cell->value()?
It is anyway hard to give better advice as you present two completely different objects and one cannot tell what those contain and how those were created and therefore no way to tell how to fix "broken" line of code. Can you extract smallest possible part of your code that is complete application and presents your problem and paste it here so that we can run it on sample data?
Update: maybe you will be even able to locate the problem yourself while preparing such minimal app...
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