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Yes, the direct matches are not a problem. I am glad you could confirm the code. For the mismatch code I mean:
I have a hash value which is a DNA sequence, example:
TGATTGAA If my % threshold was .75 for example, and if I was searching for TGAT, I would like for the program to tell me that there able for the program to find the identical match at position 1, AND identify the second match at position 5 as an "acceptable mismatch". With respect to your suggestion of regexp...Is it possible to type those in on the command line? Currently I use @ARGV[0] as my $search query, typically something like "ATC". Thanks! ER In reply to Re^2: Pattern searching allowing for mis-matches...
by MaroonBalloon
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