I am working on linux and it has no issues in creating a filename with "|" sign in it. I have figured out the problem. In actual the file created in sub createFoldersAndFiles automatically inserts a space before the extension .fasta due to which the complete file name is not being grabbed by glob. Can anyone suggest how to overcome this problem coz its very strange. Normally the FILEOUT handle does not add a space before extension. Any thoughts??? :(
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