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Hey there kenosis. Sorry to bother you again. SO the program is no longer giving me error messages, but the pushing to the arrays here:

push @activline, "$1 | $2 | $activ{$1} \n" if $activ{$1}; push @antioxline, "$1 | $2 | $antiox{$1} \n" if $antiox{$1}; push @toxinline, "$1 | $2 | $toxin{$1} \n" if $toxin{$1};

isn't working properly. For example I selected a specific number from $activin, which was in $uniprot, but it wasn't in the final output. So @activline, @antioxline and @toxinline are much smaller than they should be. So a lot of the data that is supposed to be in the output is not there anymore. I tried testing with this:

if ($1 eq "E7F888"){print $2;}

and it gave me the correct $2, I tried this too:

next unless /(E7F888)\s+.+=([^\s]+)/; push @activline, "$1 | $2 | $activ{$1} \n" if $activ{$1}; print @activline;

and it printed the correct thing. But if I removed the tests i put, and ran the normal code, E7F888 is not in @activline. Is there anything I could do to figure out what's wrong with my code? Here's it again.

#!/usr/bin/perl use Modern::Perl; use File::Slurp qw/read_file write_file/; my $uniprot = 'uniprot-ACN'; my $activin = 'Activator-PFAM.txt'; my $antioxin = 'AntiOxidant-PFAM.txt'; my $toxinin= 'Toxin-PFAM.txt'; my $activout = 'ActivACNPF.txt'; my $antioxout= 'AntioxACNPF.txt'; my $toxinout= 'ToxinACNPF.txt'; my @activline; my @antioxline; my @toxinline; my %activ = map {s/\.\d+//g; /(.+)\s+\|\s+(.+)/ and $1 => $2 } grep / +\|\s+\S+/, read_file $activin; my %antiox = map { s/\.\d+//g; /(.+)\s+\|\s+(.+)/ and $1=>$2; } grep/\ +|\s+\S+/,read_file $antioxin; my %toxin = map { s/\.\d+//g; /(.+)\s+\|\s+(.+)/ and $1=>$2; } grep/\ +|\s+\S+/,read_file $toxinin; #if (exists $activ{"E7F888"}) { #print $activ{'E7F888'};} #else {print "LOL";} for ( read_file $uniprot ) { next unless /(.{6})\s+.+=([^\s]+)/; # if ($1 eq "E7F888"){print $2;} push @activline, "$1 | $2 | $activ{$1} \n" if $activ{$1}; push @antioxline, "$1 | $2 | $antiox{$1} \n" if $antiox{$1}; push @toxinline, "$1 | $2 | $toxin{$1} \n" if $toxin{$1}; } print @activline; write_file $activout, @activline; write_file $antioxout, @antioxline; write_file $toxinout, @toxinline;

THanks so much.


In reply to Re^12: Help with pushing into a hash by jemswira
in thread Help with pushing into a hash by jemswira

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