Beefy Boxes and Bandwidth Generously Provided by pair Networks
good chemistry is complicated,
and a little bit messy -LW
 
PerlMonks  

Comment on

( #3333=superdoc: print w/replies, xml ) Need Help??

Thanks for pointing it out jgamble. Actually the picpaste had figure 7.4 from the paper (which depicts the algorithm for a better understanding). And the algorithm is Alfred Aho's famous algorithm, which has been adopted by biologists to construct a tree. The problem is that it deals with connected components, subgraphs,recursion etc all at once. So Im having trouble proceeding, though im still trying to solve it moving in bits and pieces that is.

The algorithm TreeConstruct described in section 7.2.3 is my main concern.

In reply to Re^4: phylogenetic tree construction using perl by zing
in thread phylogenetic tree construction using perl by zing

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post; it's "PerlMonks-approved HTML":



  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.
  • Log In?
    Username:
    Password:

    What's my password?
    Create A New User
    Chatterbox?
    [Corion]: GrandFather: All's well that ends well? ;)
    [GrandFather]: I'm fighting with a third party device our software is to support. The documentation for the device's SDK is quite a lot less than average and most of today was spent ...
    [GrandFather]: discovering that one of the sensors for the device lies about the gain range it is using!
    [GrandFather]: However, by the end of the day I had discovered its deceptions and now have it working correctly, so yes, all's well that ends well. :-D
    [Corion]: GrandFather: Ah, (hardware) APIs - I have a similar situation with Chrome and its API... It is fairly underdocumented and I guess I have to hunt...
    [Corion]: ... down supposedly working code to find out what I'm supposed to do
    [GrandFather]: I haven't any "working code" to inspect! I have to find ways to generate reference signals then check the numbers I get at the far end match.
    [GrandFather]: That's ok when the signal is a voltage, but there are three axis accelerometers, gyroscopes and magnetometers in these things! A little invention is needed at times!
    [Corion]: GrandFather: Yeah, in that aspect, hardware is far more a black box than software
    [GrandFather]: Oh, and the manufacturer tells lies too! I'm sure they don't mean to, but I know for sure some of the stuff they say is just wrong. It's possible they don't understand what we are asking, but that's not a good look either

    How do I use this? | Other CB clients
    Other Users?
    Others pondering the Monastery: (5)
    As of 2017-08-24 07:08 GMT
    Sections?
    Information?
    Find Nodes?
    Leftovers?
      Voting Booth?
      Who is your favorite scientist and why?



























      Results (365 votes). Check out past polls.

      Notices?