I tried the code but I get an error:
Use of uninitialized value in printf at parse_result.txt.pl line 23, <$fh> line 45.
If I change the code '\t' in place of "\t" I still get the error
The input file is:
HWUSI-EAS95L_0025_FC:3:1:2031:1075#0/1 + 2770970 2771005
HWUSI-EAS95L_0025_FC:3:1:2031:1075#0/2 + 2771158 2771190
HWUSI-EAS95L_0025_FC:3:1:2229:1075#0/1 - 1449587 1449620
HWUSI-EAS95L_0025_FC:3:1:2229:1075#0/2 - 1449425 1449460
HWUSI-EAS95L_0025_FC:3:1:5001:1079#0/1 - 1449311 1449346
HWUSI-EAS95L_0025_FC:3:1:5001:1079#0/2 - 1449301 1449336
HWUSI-EAS95L_0025_FC:3:1:5232:1082#0/1 - 1449586 1449619
HWUSI-EAS95L_0025_FC:3:1:5232:1082#0/2 - 1449544 1449577
HWUSI-EAS95L_0025_FC:3:1:6417:1078#0/1 - 4744083 4744113
HWUSI-EAS95L_0025_FC:3:1:6417:1078#0/2 - 4744011 4744042
HWUSI-EAS95L_0025_FC:3:1:6539:1083#0/1 - 4867122 4867157
HWUSI-EAS95L_0025_FC:3:1:6539:1083#0/2 - 4866942 4866977
HWUSI-EAS95L_0025_FC:3:1:10260:1083#0/1 + 1930232 1930266
HWUSI-EAS95L_0025_FC:3:1:10260:1083#0/2 + 1930354 1930389
HWUSI-EAS95L_0025_FC:3:1:10916:1076#0/1 - 4874098 4874133
HWUSI-EAS95L_0025_FC:3:1:10916:1076#0/2 - 4874089 4874121
HWUSI-EAS95L_0025_FC:3:1:11022:1076#0/1 + 749842 749877
HWUSI-EAS95L_0025_FC:3:1:11022:1076#0/2 + 749905 749936
HWUSI-EAS95L_0025_FC:3:1:11305:1077#0/1 + 2083459 2083494
HWUSI-EAS95L_0025_FC:3:1:11305:1077#0/2 + 2083661 2083696
HWUSI-EAS95L_0025_FC:3:1:11824:1080#0/1 + 1930341 1930376
HWUSI-EAS95L_0025_FC:3:1:11824:1080#0/2 + 1930373 1930408
HWUSI-EAS95L_0025_FC:3:1:12409:1075#0/1 - 4359407 4359442
HWUSI-EAS95L_0025_FC:3:1:12409:1075#0/2 - 4359384 4359419
HWUSI-EAS95L_0025_FC:3:1:15014:1078#0/1 + 742090 742125
HWUSI-EAS95L_0025_FC:3:1:15014:1078#0/2 + 742134 742168
HWUSI-EAS95L_0025_FC:3:1:15074:1080#0/1 - 2697450 2697485
HWUSI-EAS95L_0025_FC:3:1:15074:1080#0/2 - 2697347 2697381
HWUSI-EAS95L_0025_FC:3:1:15895:1077#0/1 - 3870810 3870845
HWUSI-EAS95L_0025_FC:3:1:15895:1077#0/2 - 3870798 3870832
HWUSI-EAS95L_0025_FC:3:1:16241:1078#0/1 + 3726316 3726351
HWUSI-EAS95L_0025_FC:3:1:16241:1078#0/2 + 3726444 3726479
HWUSI-EAS95L_0025_FC:3:1:16990:1084#0/1 + 4485745 4485780
HWUSI-EAS95L_0025_FC:3:1:16990:1084#0/2 + 4485764 4485797
HWUSI-EAS95L_0025_FC:3:1:1360:1089#0/1 - 4848206 4848241
HWUSI-EAS95L_0025_FC:3:1:2719:1087#0/1 - 1449535 1449570
HWUSI-EAS95L_0025_FC:3:1:2719:1087#0/2 - 1449425 1449460
HWUSI-EAS95L_0025_FC:3:1:2763:1085#0/1 - 1449423 1449458
HWUSI-EAS95L_0025_FC:3:1:2763:1085#0/2 - 1449427 1449460
HWUSI-EAS95L_0025_FC:3:1:3151:1099#0/1 - 4867745 4867773
HWUSI-EAS95L_0025_FC:3:1:3151:1099#0/2 - 4867750 4867774
HWUSI-EAS95L_0025_FC:3:1:4137:1088#0/1 - 4359723 4359758
HWUSI-EAS95L_0025_FC:3:1:4137:1088#0/2 - 4359622 4359657
HWUSI-EAS95L_0025_FC:3:1:4196:1093#0/1 + 2145336 2145371
HWUSI-EAS95L_0025_FC:3:1:4196:1093#0/2 + 2145456 2145490
I was hoping to get the output something like 2770970 and 2771190 for the first 2 entries......etc
Hope that makes sense! |