Beefy Boxes and Bandwidth Generously Provided by pair Networks
Pathologically Eclectic Rubbish Lister
 
PerlMonks  

Re: Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.

by roboticus (Chancellor)
on Feb 13, 2013 at 18:59 UTC ( #1018603=note: print w/replies, xml ) Need Help??


in reply to Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.

suchetana:

If it does what you want, then it's fine!

Since you really didn't tell what's wrong or right, I'll leave it to you to decide how fine it is.

I suggest urgently fixing your code tags, then urgently describing the symptoms to your urgent problem. Otherwise, many monks will urgently ignore it.

...roboticus

When your only tool is a hammer, all problems look like your thumb.

  • Comment on Re: Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.

Replies are listed 'Best First'.
Re^2: Urgent help required. Need a code to translate a given nucleotide sequence into proteins using codon table.
by suchetana on Feb 13, 2013 at 19:18 UTC
    See what I have is suppose TATGCATGGCATATATATACGTACGTATGCATATATATGCTAA. I want to find the substring that has ATG......TAA while reading from the first T Then I want it to start reading from the second alphabet and find the substring having ATG...TAA and again then the same thing from T to get ATG....TAA. Also, I then need to store these three substrings in three different scalars/arrays. Then I need to translate them, like if the first three are ATG it should return say M, then it reads the next 3 characters of that substring and say it is CAT. Then it will return X say. Likewise. How do I go about? Please please help

Log In?
Username:
Password:

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://1018603]
help
Chatterbox?
[vrk]: Hope he gets better soon.
[Discipulus]: hdb sorry i profit; is known that a prime number is never a figurate one nor the sumattion of two adjacent figurates of the same order? like 3th triangular+3th tetrahedric
[Discipulus]: if known where i can read about the matter?
[choroba]: he's not really sick, we just got nobody to look after him today
[Discipulus]: create an account for him; we are funny baby sitters ;=) come here child, want to listen the typeglob tale?
[vrk]: choroba Oh, that's good.
[vrk]: Discipulus I don't know much about prime numbers, but wouldn't that kind of an answer be in a graduate-level number theory book?
[Discipulus]: my 8 yo daughter has two weeks of sleep disturbs.. we are gonna be crazy..

How do I use this? | Other CB clients
Other Users?
Others meditating upon the Monastery: (7)
As of 2017-04-27 07:59 GMT
Sections?
Information?
Find Nodes?
Leftovers?
    Voting Booth?
    I'm a fool:











    Results (501 votes). Check out past polls.