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Re: Extracting IDs from fasta file

by tmharish (Friar)
on Mar 01, 2013 at 10:01 UTC ( #1021215=note: print w/replies, xml ) Need Help??


in reply to Extracting IDs from fasta file

Can some one make me a script which can do that.

Short answer: No

Long answers: Here, Here and Here

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erix .oO( that sounds Boyer-Mooreish )
[Corion]: erix: Yes, but that's mostly for skipping characters you'll never read, but this approach skips the problem of needing to load more data while looking at a half-match
[Corion]: I mostly wonder how I can add this "reversal" to my toolchest, and if it's worth it or just clever
[choroba]: It should greatly simplify the parsing code, no flags or additional reading of the next buffer needed

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