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Re: Extracting IDs from fasta file

by Sinistral (Prior)
on Mar 01, 2013 at 16:49 UTC ( #1021296=note: print w/replies, xml ) Need Help??


in reply to Extracting IDs from fasta file

Help With FASTA

In addition to the many useful responses you've received, one source of wisdom for Bioinformatics + Perl is the BioPerl Site, which you may not previously have been exposed to. I highly recommend you begin your search for a solution there. A quick search revealed a BioPerl page devoted just to FASTA, which will in turn lead you to the many Bio-Perl-Monks who have already developed solutions for just your problem.

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[Lady_Aleena]: Good guh! I think I will use File::Find when working in perl. That is too many toothpicks.
[marioroy]: mp3info must be in the PATH
[marioroy]: LA ++
[Lady_Aleena]: marioroy, this is forcing me to learn perl modules to use instead.
[marioroy]: qx isn't fun if having to backslash ' and " and \.
[marioroy]: LA ++ ok.
[marioroy]: I wrote a mp3info script to see the arguments received with print "@ARGV\n";
[marioroy]: And compared with running find on the command line.
[marioroy]: Bye all.
[Lady_Aleena]: marioroy, bye.

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