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Re^2: Counter - number of tags per interval

by baxy77bax (Chaplain)
on May 04, 2013 at 15:23 UTC ( #1032050=note: print w/ replies, xml ) Need Help??


in reply to Re: Counter - number of tags per interval
in thread Counter - number of tags per interval

yes that is true (why is this so odd ?? in bioinformatics you have 50-500gb read-mapps (files) and nobody finds that odd :) ). Maximum coordinate ?? well that depends on a simulation. but i would say for id = a, max is app. 5*10^9 i mean i need to find this out by going through the file.


Comment on Re^2: Counter - number of tags per interval
Re^3: Counter - number of tags per interval
by BrowserUk (Pope) on May 04, 2013 at 15:35 UTC
    why is this so odd ?? i

    Not odd. Just important to know as it greatly affects the possible solutions.

    How long does/do you estimate it to take to process those two files with your current code?


    With the rise and rise of 'Social' network sites: 'Computers are making people easier to use everyday'
    Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error.
    "Science is about questioning the status quo. Questioning authority".
    In the absence of evidence, opinion is indistinguishable from prejudice.
      current estimates:

      One Id app. 8-12 h
      50 id's app. 500h = app. 20 days which is 20 times longer then the actual computation
      since there will be more of such simulations i think a better solution would be preferable. Unfortunately i cannot temper with the simulation part since i have no source , but even if i did i wouldn't do it since there are a lot of heuristics involved which i honestly don't understand.

        I'm still having trouble understanding the logic in your code.

        Do you only compare lines in file2 in section #a with ranges in in file1 prefixed with a?


        With the rise and rise of 'Social' network sites: 'Computers are making people easier to use everyday'
        Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error.
        "Science is about questioning the status quo. Questioning authority".
        In the absence of evidence, opinion is indistinguishable from prejudice.

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