Beefy Boxes and Bandwidth Generously Provided by pair Networks
good chemistry is complicated,
and a little bit messy -LW

Re: BLAST and BioPerl

by ww (Bishop)
on Sep 03, 2013 at 15:03 UTC ( #1052125=note: print w/ replies, xml ) Need Help??

in reply to BLAST and BioPerl

The messages you've quoted do NOT support your supposition that "the problem is that it needs to use the NCBI BLAST installed components, which it cannot find." They address themselves solely to what choroba pointed out: that the first use of each needs to be declared with a "my" as, for one possibility,

my ($blast_obj, $seq_obj, $report_obj, $result_obj);

If Perl couldn't find something you tried to use, it would have provided an additional message specifically stating that it can't find it (by name).

Comment on Re: BLAST and BioPerl
Select or Download Code

Log In?

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://1052125]
and the web crawler heard nothing...

How do I use this? | Other CB clients
Other Users?
Others browsing the Monastery: (2)
As of 2015-11-26 13:12 GMT
Find Nodes?
    Voting Booth?

    What would be the most significant thing to happen if a rope (or wire) tied the Earth and the Moon together?

    Results (699 votes), past polls