Beefy Boxes and Bandwidth Generously Provided by pair Networks
Perl: the Markov chain saw
 
PerlMonks  

Re: Re: Re: Similarity of strings

by ariels (Curate)
on May 16, 2002 at 10:38 UTC ( #166968=note: print w/ replies, xml ) Need Help??


in reply to Re: Re: Similarity of strings
in thread Similarity of strings

Perhaps bioperl has a BLAST parser you could use? (I've never used their parsers, so I cannot comment further.)


Comment on Re: Re: Re: Similarity of strings
Re: Re: Re: Re: Similarity of strings
by professa (Beadle) on May 16, 2002 at 12:02 UTC
    I'm using BioPerl already, but I think parsing a 40-200 Mb BLAST-report is over the top and won't save much time (if at all) over calculating the similarities by myself. In fact, that would be a real memory-filler. ;-)

Log In?
Username:
Password:

What's my password?
Create A New User
Node Status?
node history
Node Type: note [id://166968]
help
Chatterbox?
and the web crawler heard nothing...

How do I use this? | Other CB clients
Other Users?
Others romping around the Monastery: (9)
As of 2014-12-27 17:55 GMT
Sections?
Information?
Find Nodes?
Leftovers?
    Voting Booth?

    Is guessing a good strategy for surviving in the IT business?





    Results (177 votes), past polls