Beefy Boxes and Bandwidth Generously Provided by pair Networks
Your skill will accomplish
what the force of many cannot
 
PerlMonks  

Re^3: motif finding

by devi (Initiate)
on Feb 03, 2012 at 06:08 UTC ( [id://951604]=note: print w/replies, xml ) Need Help??


in reply to Re^2: motif finding
in thread motif finding

Thank you very much for the reply. In the code that i have used i am giving the input (the motif sequence). considering entire genome as a single string if i want the most repeated elements of say 20 base pairs in the entire string how can i find it?

Replies are listed 'Best First'.
Re^4: motif finding
by RichardK (Parson) on Feb 03, 2012 at 12:47 UTC

    I'm not sure what you're looking for, can you explain with a simple example?

    Are you looking for repeats of given string or something more complex?

Log In?
Username:
Password:

What's my password?
Create A New User
Domain Nodelet?
Node Status?
node history
Node Type: note [id://951604]
help
Chatterbox?
and the web crawler heard nothing...

How do I use this?Last hourOther CB clients
Other Users?
Others chilling in the Monastery: (2)
As of 2024-03-19 04:36 GMT
Sections?
Information?
Find Nodes?
Leftovers?
    Voting Booth?

    No recent polls found