Thanks, but that is not what I need. What I must have, is the number of A, C, T, G and - per POSITION. So the output would be something like:
POS #1 A:150 | T:50 | G:0 | C:20 | -:30
POS 21 A:80 | T:60 | G:40 | C:20 | -:0
So the numbers must add up the number of sequences, each time...
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